Graduate Program in Microbiology
UC Berkeley's graduate program in Microbiology provides an outstanding and rigorous course of study and is repeatedly ranked among the best in the world. The program is both immersive and thorough. Students take a variety of classes, teach as graduate student instructors, work with top scientists and perform research in our labs. Following is a detailed explanation of the program, including course of study, advising, lab rotation, teaching, research and more.
Evaluation, Lab Rotations, Required Courses
New students will meet with Graduate Advisors before fall semester begins. The Graduate Advisor evaluates whether each student completed the courses, or equivalents, required for an undergraduate major in Microbial Biology. With a broad admissions policy, we expect that some students may need to take specific undergraduate courses in the first semesters to expand their knowledge.
Incoming students must rotate through three different laboratories during the first year, for about 10 weeks per rotation. The student may select laboratories affiliated with the Graduate Group, or select a lab outside the Group to learn a particular skill. Students explore opportunities for rotations with the relevant faculty and the Graduate Advisor. The rotations give students an opportunity to explore an area of research in which they may have an interest, but no direct experience.
In most cases the rotations will involve laboratory work. However, sometimes a rotation could take the form of reading and discussion. Although some incoming students may have interest in particular faculty for thesis research, students need rotations for exposure to research outside their immediate area of interest. The Research Advisor gets chosen after completion of the student's third rotation. Students have the freedom to investigate different opportunities for a suitable major advisor. Whereas students may express interest in any particular laboratory at any time, they may not establish firm commitments before completing all three rotations. The student generally chooses a Research Advisor after the third rotation. In exceptional cases the student may take a fourth laboratory rotation. After formalizing the choice of a research advisor, the student initiates a research project in the Advisor's laboratory.
At the start of the first year, the Head Graduate Advisor sets expectations about additional course work beyond the stated requirements. Any required courses seek to ensure that each student has a strong background in the general field of microbial biology.
In the first year, students must enroll in the two-semester core course, PMB 220A-F. The core course is comprised of 6 modules, which cover the following topics: microbial genetics, genomics and computational biology, microbial diversity and evolution, cell structure and function, microbial physiology and microbial ecology. The Qualifying Examination tests these fields of knowledge near the end of the student's second year. In addition to the core course, PMB 202 and PMB 210 are required. PMB 202 "Faculty Research Review" exposes students to the research of members of the Graduate Group, via capsule presentations of their ongoing research and its significance to the field of Microbiology. The objectives of PMB 210 “Scientific Reasoning and Logic” are to teach students to critically read and interpret scientific papers.
During the first two years, all students must enroll in two graduate-level seminar courses. Seminars offer students the opportunity for oral presentation of subjects of particular interest. Seminars also let students meet individual faculty and other students in a small-group setting. The Workshop on Teaching, PMB 300, must also be taken the Fall semester of a student’s second year.
Program Review, Teaching
Submission of a Ph.D. thesis containing the results of original, publishable research remains the culminating and defining event of a graduate career in Microbiology. Graduate students achieve that final event in stages, progressing from academic work to full-time research. During the first year, students participate in the two-semester core course modules, PMB 220A-F, and also take PMB 202 and PMB 210. In PMB 210 “Scientific Reasoning and Logic”, students gain information and participate in discussions intended to provide perspective on many different areas of microbiology. Students critically review current literature to develop analytical skills needed for their graduate studies and later work. In PMB 202 “Faculty Research Review”, students meet the faculty members of the Graduate Group in Microbiology. These researchers summarize their work to give students an appreciation of the breadth of Microbiology, and to help students select faculty mentors in whose laboratories they start research during 10-week rotations.
Selecting a Lab
During the first year, students rotate in various labs of their choice to find a home where they can conduct their research with the guidance of a Principal Investigator. Lab rotations take place in PMB Labs and GGM Labs, giving students a wide variety of choices. By the end of the first year, students select a research laboratory in for thesis research, and assemble a thesis committee. During the second year, research occupies more student time, and formal academic work less. In the second year, students take more specialized courses to prepare them for research areas chosen, such as seminar classes to read and discuss relevant scientific literature. They also work as Graduate Student Instructors (GSIs) for undergraduate classes to develop their teaching skills.
Normally, students take the Qualifying exam twards the end of second year. This examination determines whether, through academic and independent study and research experiences, a student has successfully prepared for independent work. Students who pass the exam gain admission to formal candidacy for the Ph.D. degree. Then, students spend the most remaining graduate school time working on their research projects.
Graduate Review, Qualifying Exam, Dissertation
The student normally takes the Qualifying Examination normally in the third or fourth semester. The student, in consultation with the Head Graduate Advisor, will recommend a four-member Examination Committee, approved by the Graduate Division. This Committee shall have at least three regular faculty from the Graduate Group and include representatives from least two departments. Adjunct Professors may serve as members of the Committee. Non-Senate members and faculty from other campuses may serve upon approval of the Graduate Advisor and Dean of the Graduate Division.
No later than one week before the Examination the candidate will prepare and deliver to the Committee two research proposals, both of the scope and caliber appropriate for doctoral dissertation research. The student develops the topics of both the major and minor proposals in consultation with the Examination Committee Chair. To focus questioning in the candidate's proposed research area, the major proposal, in about three pages, should address the specific topic proposed for thesis research. To provide a starting point for questioning across the breadth of microbial biology, the minor proposal, in about two pages, should address a specific topic in a field that differs significantly in approach from that of the candidate's proposed dissertation research. The proposals serve as the basis for the oral examination, do not limit it.
The student, in consultation with the Research Advisor and Graduate Advisors, should ensure that Examination Committee composition's permits it to assess knowledge in both areas covered by the proposals. Any examiner may ask questions in any subject area. Thus, we strongly recommend that the student meet with each Committee member before the Examination. The professor and student may choose to focus on topics within a particular subject area and may meet regularly to discuss these topics. As long as the Committee adequately assesses the student's broad knowledge of microbial biology, the Committee may discuss additional areas by mutual agreement between the student and the examiners.
The oral examination will last approximately 3 hours. Approximately one-third of the Examination covers the major proposal, with the remaining time allocated to the minor proposal and the breadth of microbiology. Passing the Qualifying Examination requires a unanimous vote of the Committee.
Following the Examination, the Committee Chair will write a short statement about the performance of the student in each area. This summary, added to the student's file, documents that the Committee spent adequate time on Examination areas and also guides the student's future program.
The student invites a three-member committee to serve as the Dissertation Committee. (The student may request a four-member committee, or the Graduate Division may require one in certain circumstances). The student identifies the Committee members in consultation with the Head Graduate Advisor. The Committee must include representatives of at least two academic departments. The Chair of the Committee will be the Research Advisor, who must have faculty membership in the Graduate Group. However, an adjunct faculty member can serve as Co-Chair with a regular faculty Co-Chair. The committee must have at least one Academic Senate member from outside the Graduate Group.
At least once per year this Committee will meet with the student and evaluate progress. The Graduate Division requires that a form be sent to the Graduate Division certifying progress made by the student. The Dissertation Committee members will also advise the student about carrying out research.
All members of the Committee must approve and sign the dissertation before the Ph.D. degree gets conferred.
For the Ph.D. degree, students must complete a dissertation based on original and independent research.
The Group does not require a final examination. However, all students must present a finishing seminar to summarize the results of their dissertation project, and must respond to questions from the audience. If the faculty do not find the seminar satisfactory, they may ask the student to present the seminar again to address the concerns.
Most students take five years to complete the Ph.D. program -- two years before the Qualifying Examination and three years after.
Prospective students who wish to undertake graduate studies in microbiology at UC Berkeley may apply to one of the following three independent graduate programs:
- Graduate Group in Microbiology - this program
- Infectious Diseases and Immunity
- Molecular and Cell Biology
- Civil & Environmental Engineering
- Chemical Engineering
- Environmental Science, Policy & Management
- Molecular & Cell Biology
- Nutrition Sciences & Toxicology
- Plant & Microbial Biology
- School of Public Health.
- Infectious Diseases and Immunity
Other Programs on Campus
- The graduate program in Infectious Diseases and Immunity, in UC Berkeley's Department of Public Health, provides opportunity for the study of the biology of infectious agents, their interaction with human and other hosts, and their relationship with the environment.
- The Molecular and Cell Biology Department offers a program for students with broad interests in biology who wish to benefit from this large department's diversity of scientific study in such areas as biochemistry, structural biology, immunology, and microbiology.
Q: Where can I find information about PMB faculty and graduate program requirements?
A: Please visit these links:
Department of Plant and Microbial Biology
Plant Biology Program Page
Plant and Microbial Biology Faculty Page
Microbiology Program Page
Graduate Group in Microbiology Faculty Page
Graduate Admissions Brochure
Q: How many students are enrolled in the program? How many students are admitted each year?
A: As of Fall 2017, we have 42 students in our Ph.D. in Plant Biology program and 65 students in the Ph.D. in Microbiology program. The number of students we admit varies from year to year depending on funding. For the past several years, the admissions committee for each program has offered admission to 10-18 applicants.
Q: When is the deadline for admission?
A: The application submission deadline is November 30, 2018, 11:59:59 Eastern Time (ET).
Q: Do you offer financial support for your students?
A: All of our admitted students receive five full years of funding contingent upon satisfactory academic progress. The annual stipend for 2018-2019 is $36,000.
Q: Do you admit international students? How can international students increase their chances of being admitted?
A: We generally admit one international student per program, per year. Admissions competition is stiffer for international students. International students who have a fellowship from an outside agency that will offset their cost, such as the Fulbright, are included with domestic applicants.
Q: I already have a Master's degree. May I transfer my coursework to UC Berkeley?
A: Although having your Master's degree may help you in the admissions process, we rarely excuse a student from any of our Ph.D. coursework for this reason. We have minimal coursework requirements, designed not only to prepare you for your qualifying exam, but also to help connect you with the other students in your cohort.
Q: I've already selected the faculty member with whom I want to work. Do I still have to do rotations, or will you admit me directly into a lab?
A: We do not admit students directly into a permanent lab. Each student must complete three required lab rotations during the first year before joining a lab.
Q: I am interested in several different programs at UC Berkeley. May I apply to all of them?
A: No. UC Berkeley allows students to apply to only one graduate program per year.
Q: How do I know what materials you've already received for my file?
A: All required materials will be uploaded to the graduate application. Once you submit your application you will still be able to check for exam scores and recommendation letters via the "application status page" at grad.berkeley.edu
Q: May I submit more than three letters of recommendation?
A: Yes, you may submit additional letters of recommendation via the online application.
Q: I have submitted all my required materials and would like to update one of my transcripts. How may I do that?
A: In order to update application materials after submission, please email firstname.lastname@example.org
Q: I would like to tour the department. Can I drop in on a few faculty members and research labs?
A: All visitors are welcome to take a Berkeley campus tour. You can also drop in or make an appointment to meet with the Graduate Affairs Advisor Rocío Sanchez. Regrettably, the department generally cannot accommodate the many prospective students who wish to drop in to visit faculty or research labs. Students who apply for admission and are invited to our annual interview weekend in late January will meet with faculty and current graduate students, and tour our labs and facilities.
Graduate Group in Microbiology
The Graduate Group in Microbiology (GGM) forms the foundation of our Graduate Microbiology Program. The GGM is composed of 53 faculty from diverse departments, colleges, and schools (Plant and Microbial Biology; Molecular and Cell Biology; Public Health; Civil and Environmental Engineering; Chemical and Biomolecular Engineering; Environmental Science, Policy, and Management; Nutritional Sciences and Toxicology; Optometry; and Integrative Biology) and is administered by the Department of Plant and Microbial Biology.
The group awards the PhD degree in Microbiology. Students in the group have access to diverse disciplines through an integrated program of study that allows each student to pursue specialized interests. Students gain a breadth of understanding of microbiology from the molecular to the cellular levels of organization, as well as the interactions of microbes—beneficial and pathogenic—with other organisms.
GGM faculty have research interests in four broad areas: ecology and evolution, genetics and development, physiology and biochemistry, and host-microbe interactions. The research of many faculty spans more than one of these categories. In addition, the research goals vary from addressing fundamental questions in biology to applied studies in the control or use of microbes. Some faculty conduct research on both fundamental and applied topics.
The committee bases admissions recommendations on:
- Grades and coursework at the undergraduate and graduate levels
- Letters of recommendation
- Written statements of academic and professional goals
- Other documentation of research
- Academic potential and accomplishment
Microbiology Program Requirements
- A basic background in chemistry, physics, mathemativs and biology, roughly equivalent to the Department's undergraduate program in Microbial Biology.
- Completed online Graduate Application for Admissions and Fellowships. The application submission deadline is November 30, 2018, 11:59:59 Eastern Time (ET).
- Transcripts from each college and graduate institution attended.
- The Test of English as a Foreign Language (TOEFL) score for applicants who have received undergraduate degrees from institutions wher eenglish is not the language of instruction. With few exceptions, UC Berkeley requires a TOEFL score of at least 570 on the paper and pencil test, or 230 on the computer-based test and 90 on the Internet-based TOEFL by November. Note on the TOEFL order form the insitution code 4833 (UC Berkeley) and the department code 37 (botany). Please read the Graduate Division's Evidence of English Language Proficiency for more information.
- If you have additional questions, please contact Graduate Student Advisor Rocio Sanchez at email@example.com or call 510-642-5167.
- Please refer to our 2019 Graduate Application Instructions when completing the online graduate application for admission.